The following facets are included as part of “core” search results.

PLOS Search Field Description Note
Specialized indexes for faceting, see notes below    
doc_partial_parent_id DOI the ID value of the parent document
doc_type Document Type Two possible values: full or partial
doc_partial_type The type article section introduction, abstract, etc
doc_partial_body The text of the article section  
Facet fields    
affiliate_facet Affiliate (facet) Don’t search against
author_facet Author (facet) Don’t search against
subject_facet Subject (facet) Don’t search against
editor_facet Editor (facet) Don’t search against
article_type_facet Article Type (facet) Don’t search against

However, two of these facets deserve special attention: cross_published_journal_key and doc_partial_type. To build the result sets for these two fields, two additional SOLR queries are required.

The “cross_published_journal_key” facet provides vision into how many documents (across all journals) match the terms you entered. It is queried separately because the “core” search is, by default, journal specific.

For details on building SOLR queries, look at Apache’s SOLR website. But here a few sample queries against our schema to get you started. Results are given in XML, Solr’s default format.

Simple search for the term “test”. An article is included in this result set if the word “test” appears anywhere in the article.

Search for the term “test” with facets. This query also queries for the term “test”, but the results also include facets for subjects, authors, editors, article types, and affiliates.

Get the journals facet (cross_published_journal_key). This shows all of the Journals which have been indexed in Solr.

Get the where my keywords appear facet (doc_partial_type). This is a list of all the sections of an article (e.g., Body, Materials and Methods, Introduction, etc) in which keywords can be specifically sought. For instance, if you want to know whether a name appears in only the References section.

When thinking of documents stored in SOLR, it’s important to think of each document as a collection of fields. Fields have different storage mechanisms optimized for searching and faceting. It’s important at this point to have a good understanding of what a facet is.

Faceted search is the dynamic clustering of items or search results into categories that let users drill into search results (or even skip searching entirely) by any value in any field. Each facet displayed also shows the number of hits within the search that match that category. Users can then “drill down” by applying specific constraints to the search results. Faceted search is also called faceted browsing, faceted navigation, guided navigation and sometimes parametric search.”Lucid Imagination

Not all stored fields should be searched against. Fields ending with _facet are stored in a way to generate facets accurately and are not designed to be search against. Some fields are indexed, but not stored and therefore can not be part of the search results. We also store two types of documents as defined by the doc_type field: “full” and “partial”. The later being for computation of the “Where my keywords appear” facet.

For normal search queries, “doc_type:full” should always be used as a filter (the fq url query parameter).

Note, that we use two types of searches, dismax and standard. Dismax searches are used for simple searches where no fields are specified. Under this circumstance the title, author and everything fields are searched with the highest priority given to title and author. For more details on dismax look at the SOLR configuration file and SOLR documentation. For 90% of our searching this is what should be used. Standard searches can be used for more specific results against specific fields, for these searches, one or more fields must be specified to search against.

“Where my Keywords Appear” Facet

The logic gets a little tricky here. SOLR out of the box does not provide a way for us to tell our users what areas of the document the search terms appeared in. In fact this is kind of backwards to the way SOLR is designed. But we determined that this was a powerful bit of knowledge and worth the effort in putting together a system that allows this as a possibility. To do this when an article is ingested into the system a number of SOLR documents are created. First a document is created of doc_type “full” that contains the whole body of the research article. For most searches this is all you’ll want to search against by using the filter query: fq=doc_type:full.

In addition to this first document, a number of document parts are created:,doc_partial_parent_id

You’ll notice that each of these partial documents contain a number of fields duplicated in the original article’s document, we do this so most search terms applied to the search for the parent document, can be applied to the document parts.*

The difference between the full document and the partial, is that partial has no fields representative of “everything” and instead have a “doc_partial_body” field and “doc_partial_type” field. FYI, “doc_partial_type” is not stored and can only be retrieved as a facet.

So if we want to find all partial documents with terms that match our search query:

If we want to generate a facet telling us what document parts contain the terms entered: